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remove bit about supporting non cubic boxes for now
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j-wags committed Dec 8, 2023
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4 changes: 2 additions & 2 deletions docs/users/pdb_cookbook/index.ipynb
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"\n",
"This PDB file comes from the [AMBER tutorial on making solvated simulations](https://ambermd.org/tutorials/basic/tutorial7/index.php). We have slightly modified the procedure to create a file suitable for loading into the OpenFF Toolkit:\n",
" * TIP3P water is used instead of OPC (a four-site model)\n",
" * a cubic solvent box is used instead of an octohedron (though the Toolkit supports arbitrary triclinic boxes)\n",
" * a cubic solvent box is used instead of an octohedron\n",
" * the N terminus of the protein is made neutral"
]
},
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.13"
"version": "3.11.4"
},
"widgets": {
"application/vnd.jupyter.widget-state+json": {
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