Update numdiff option handling

[timmens]

• Create a NumdiffOptions class
• Update documentation
• Deprecate numdiff_options in estimation functions
• Allow PyTrees in derivative arguments

[codecov]

Codecov Report

Attention: Patch coverage is 95.36082% with 9 lines in your changes missing coverage. Please review.

Files with missing lines	Patch %	Lines
src/estimagic/estimate_ml.py	88.13%	7 Missing ⚠️
src/estimagic/estimate_msm.py	97.43%	1 Missing ⚠️
src/estimagic/examples/logit.py	92.30%	1 Missing ⚠️

Files with missing lines	Coverage Δ
src/estimagic/__init__.py	100.00% <100.00%> (ø)
src/estimagic/bootstrap.py	99.06% <100.00%> (ø)
src/estimagic/bootstrap_ci.py	100.00% <100.00%> (ø)
src/estimagic/bootstrap_helpers.py	100.00% <ø> (ø)
src/estimagic/bootstrap_outcomes.py	100.00% <100.00%> (ø)
src/estimagic/bootstrap_samples.py	100.00% <ø> (ø)
src/estimagic/config.py	100.00% <ø> (ø)
src/estimagic/estimation_table.py	84.36% <100.00%> (ø)
src/estimagic/lollipop_plot.py	100.00% <100.00%> (ø)
src/estimagic/ml_covs.py	84.14% <100.00%> (ø)
... and 94 more

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[janosg]

Thanks!