Repositories list

• rivuletpy

  Public
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

  pythonmorphologyimage-processing+ 10tracingmedical-imagingcenterlineneuronmedical-image-processingairwaysarteries+ 3

  Python

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  BSD 3-Clause "New" or "Revised" License

  •16•66•9•0•Updated Nov 16, 2022Nov 16, 2022

• Tuby

  Public
  Simple tool for synthesizing 3D volumes with fibers. Useful for bench-marking neuron tracing algorithms.

  Python

  •1•1•0•0•Updated Feb 15, 2018Feb 15, 2018

• Rivulet-Neuron-Tracing-Toolbox

  Public
  Deprecated - Pls use the new Rivuletpy library https://github.com/RivuletStudio/rivuletpy

  MATLAB

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  Apache License 2.0

  •2•6•1•0•Updated Oct 23, 2017Oct 23, 2017

• app2_py

  Public
  python version for app2

  Python

  •1•4•1•0•Updated Jun 6, 2017Jun 6, 2017

• vaa3d_tools

  Public
  A fork of the tools of www.vaa3d.org - vaa3d_tools. Used for algorithm porting in RivuletStudio@Uni.Sydney

  C++

  •

  Other

  •69•0•1•0•Updated Dec 5, 2016Dec 5, 2016

• 3D-client

  Public
  JavaScript

  •0•0•0•0•Updated Dec 2, 2016Dec 2, 2016

• RivuletViewer

  Public
  JS-based viewer for neuron images and swc. Extended from SharkViewer (https://github.com/JaneliaSciComp/SharkViewer)

  JavaScript

  •0•1•0•0•Updated Mar 26, 2016Mar 26, 2016