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    19 repositories

    • ECR-Informatics-Committee

      Public
      A repo for the UK DRI Early Career Researchers Informatics Committee. Containing useful information such as the committee charter, and kanban boards for our projects.
      HTML
      •0•1•3•1•Updated Jan 28, 2025Jan 28, 2025

    • sc_pd_ras_dop

      Public
      This repository is for intial work on a project to look at single cell transcriptome data in controls and parkinson disease donars.
      HTML
      •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • resilient

      Public
      Resilient is a digital platform designed to integrate data from remote heatlhcare monitoring devices and wearable devices.
      Python
      •
      MIT License
      •2•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • ScoreREMGUI

      Public
      ScoreREM: A user friendly Matlab-GUI for rapid eye movement (REM) sleep microstructure annotation and quantification
      pythonmatlab-guisleep-analysiselectrooculographypolysomnographyscoreremremsleep
      GNU General Public License v3.0
      •4•0•0•0•Updated Oct 5, 2024Oct 5, 2024

    • XWAS_AD_summary_stats

      Public
      0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • SSRC_SleepStatistics

      Public
      Document and code that generates the Sleep Statistics defined at the Surrey Sleep Research Centre
      MATLAB
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Aug 5, 2024Aug 5, 2024

    • EBI-workshop---Extracting-information-from-omics-data

      Public
      Part of the Data-driven approaches to understanding dementia EBI course. The session titled "Extracting information from omics data"
      HTML
      •32•2•0•0•Updated Apr 9, 2024Apr 9, 2024

    • ECR-Informatics-symposium-2024

      Public
      Collection of materials related to the UK DRI ECR informatics symposium
      HTML
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jan 18, 2024Jan 18, 2024

    • Guidelines-and-policies

      Public
      0•0•0•0•Updated Jan 14, 2024Jan 14, 2024

    • SPARC

      Public
      This is the repository for the SPARC team working on the mental health challenges in the Wellcome Data Science Ideathon.
      machine-learningmental-healthtrialsparticipationtrail-participation
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • tosca

      Public
      Nextflow analysis pipeline for hiCLIP and proximity ligation sequencing data
      Nextflow
      •
      MIT License
      •2•1•0•0•Updated Jun 5, 2023Jun 5, 2023

    • ML4NS

      Public
      Machine Learning for Neuroscience Course (Imperial College London/UK DRI Care Research and Technology Centre)
      Jupyter Notebook
      •2•0•0•0•Updated Jun 2, 2023Jun 2, 2023

    • TIHM-Dataset

      Public
      TIHM: An open dataset for remote healthcare monitoring in dementia
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•1•0•0•Updated Mar 3, 2023Mar 3, 2023

    • MungeSumstats

      Public
      Rapid standardisation and quality control of GWAS or QTL summary statistics - Highly commended entry, Prize for Computational Reproducibility in Dementia Research 2022
      R
      •15•1•0•0•Updated Nov 7, 2022Nov 7, 2022

    • dcarte

      Public
      Data ingestion tools to standardise data-driven analysis across data domains e.g., IoT, behavioural, physiological. (UK DRI Care Research & Technology)
      Jupyter Notebook
      •8•4•0•0•Updated Mar 23, 2022Mar 23, 2022

    • minder_utils

      Public
      The library to access the UK DRI minder study data developed by Alex Capstick and Honglin Li.
      python-libraryminderukdri
      Python
      •
      MIT License
      •6•0•0•0•Updated Mar 15, 2022Mar 15, 2022

    • CHAS

      Public template
      Cell type-specific histone acetylation score. (Winner of UK DRI Computational Reproducibility Prize 2021)
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 8, 2021Sep 8, 2021

    • echolocatoR

      Public template
      Automated statistical and functional fine-mapping pipeline with extensive API access to datasets. (Winner of UK DRI Computational Reproducibility Prize 2021)
      R
      •
      MIT License
      •13•0•0•0•Updated Aug 30, 2021Aug 30, 2021

    • CML-UKDRI

      Public
      A Semi-supervised Model to Analyse Partially Labelled and Imbalanced Healthcare Data. (UK DRI Care Research & Technology)
      2•1•0•1•Updated Feb 1, 2021Feb 1, 2021