BioNLP Lab

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41 repositories

2024_AMIA_LLM_Tutorial
Public
HTML
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Nov 9, 2024Nov 9, 2024
2024_WCM_CTSC_seminar_GenAI
Public
WCM CTSC Seminar Series on Generative AI & Large Language Models
HTML
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Nov 4, 2024Nov 4, 2024
2025_CTIV_5057_LLMs_in_CTS
Public
SCSS
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
2024_AMIA_LLM_Panel
Public
HTML
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BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Nov 1, 2024Nov 1, 2024
2024_AMIA_Multimodal
Public
HTML
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Oct 31, 2024Oct 31, 2024
2025_SYSEN_5630_ClinicalNLP_and_LLMs
Public
0•0•0•0•Updated Oct 30, 2024Oct 30, 2024
2025_HINF_5016_NLP_in_Health
Public
0•0•0•0•Updated Oct 30, 2024Oct 30, 2024
DermpathNet
Public
MIT License
•0•0•0•0•Updated Oct 28, 2024Oct 28, 2024
2024_MICCAI_CXRLT
Public
HTML
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Oct 9, 2024Oct 9, 2024
CTSA_GenAI_Survey
Public
MIT License
•0•0•0•0•Updated Sep 28, 2024Sep 28, 2024
llm4proofreading
Public
Reportedly LLMs: Generative Large Language Models for Proofreading Errors in Radiology Reports
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Sep 10, 2024Sep 10, 2024
longitudinal_transformer_for_survival_analysis
Public
[npj Digital Medicine] "Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence modeling" by Gregory Holste, Mingquan Lin, Ruiwen Zhou, Fei Wang, Lei Liu, Qi Yan, Sarah H Van Tassel, Kyle Kovacs, Emily Y Chew, Zhiyong Lu, Zhangyang Wang, & Yifan Peng
deep-learning medical-imaging survival-analysis longitudinal-data glaucoma macular-degeneration fundus-image
Python
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MIT License
•1•6•0•0•Updated Aug 29, 2024Aug 29, 2024
2024_commsmed_inconsistency_detection
Public
A Natural Language Processing Approach to Detect Inconsistencies in Death Investigation Notes Attributing Suicide Circumstances
nlp suicide nvdrs
Python
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MIT License
•0•0•0•0•Updated Jul 27, 2024Jul 27, 2024
redose
Public
MIT License
•0•0•0•0•Updated Jul 25, 2024Jul 25, 2024
report_generation_amia2022
Public
Python
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MIT License
•2•8•3•0•Updated Jun 20, 2024Jun 20, 2024
AMD_prognosis_mlmi2022
Public
Python
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MIT License
•0•1•0•0•Updated May 23, 2024May 23, 2024
suicide_sdoh
Public
Suicide-specific SDoH
Python
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MIT License
•1•1•0•0•Updated May 23, 2024May 23, 2024
PMC-CXR
Public
Python
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MIT License
•1•0•0•0•Updated May 23, 2024May 23, 2024
MMSNet_mlmi2022
Public
Python
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MIT License
•0•2•0•0•Updated May 23, 2024May 23, 2024
Fairness
Public
Python
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MIT License
•0•3•0•0•Updated May 23, 2024May 23, 2024
negbio2
Public
High-performance tool for negation and uncertainty detection in radiology reports
negation negation-patterns negbio radiology-report
Python
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Other
•1•16•2•2•Updated May 3, 2024May 3, 2024
medtext
Public
Python
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MIT License
•0•2•1•0•Updated Feb 4, 2024Feb 4, 2024
2023_AMIA_LLM
Public
HTML
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 31, 2024Jan 31, 2024
CXRFairness
Public
Python
•0•1•0•0•Updated Nov 26, 2023Nov 26, 2023
bioc
Public
Data structures and code to read/write BioC XML and Json.
json xml writer reader bioc bionlp
Python
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MIT License
•11•31•1•0•Updated Aug 21, 2023Aug 21, 2023
radtext
Public
Python Radiology Text Analysis System
nlp text-mining radiology-report
Python
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MIT License
•8•13•2•1•Updated Jul 31, 2023Jul 31, 2023
2023_ichi_llm
Public archive
Workshop on Large Language Models
HTML
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jun 26, 2023Jun 26, 2023
2023_ICCV_CVAMD
Public
HTML
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jun 24, 2023Jun 24, 2023
GlaucomaNet
Public
A deep-learning algorithm for the diagnosis of primary open-angle glaucoma from fundus photographs
Python
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BSD 3-Clause "New" or "Revised" License
•0•4•0•0•Updated Mar 29, 2023Mar 29, 2023
mimic_icu_mortality_ichi2021
Public
machine-learning
Python
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BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Dec 2, 2022Dec 2, 2022