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    16 repositories

    • pcst_fast

      Public
      A fast implementation of the Goemans-Williamson scheme for the prize-collecting Steiner tree / forest problem.
      graphsprize-collectingpcstgoemans-williamsonsteiner
      C++
      •
      MIT License
      •17•48•4•0•Updated Oct 17, 2024Oct 17, 2024

    • neurodegeneration-network

      Public
      scripts used to generate the analysis and figures in the manuscript An integrative systems-biology approach defines mechanisms of Alzheimer’s disease neurodegeneration, Leventhal et al.
      HTML
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • OmicsIntegrator2

      Public
      Prize-Collecting Steiner Forests for Interactomes
      proteomicsomicssteiner-treeprize-collecting
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •21•54•13•3•Updated Jun 18, 2024Jun 18, 2024

    • image-preprocessing

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

    • shh-mben

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 5, 2023Dec 5, 2023

    • imaging-resources

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Nov 10, 2023Nov 10, 2023

    • mogp

      Public
      Mixture of Gaussian Processes Model for Sparse Longitudinal Data
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •4•32•1•0•Updated Dec 6, 2022Dec 6, 2022

    • GarNet

      Public
      epigeneticsdata-integrationomicstranscriptome
      HTML
      •2•4•6•2•Updated Jun 21, 2022Jun 21, 2022

    • QBD

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 26, 2019Apr 26, 2019

    • galaxy-neurolincs

      Public
      The NeuroLINCS Galaxy Flavor
      Jupyter Notebook
      •3•3•1•0•Updated Apr 16, 2019Apr 16, 2019

    • GSLR

      Public
      An algorithm for classification from a graph-sparse support
      sparsitygraphclassificationlogistic-regressionstructured-sparsity
      Jupyter Notebook
      •4•15•0•0•Updated Jan 30, 2019Jan 30, 2019

    • OmicsIntegrator

      Public archive
      This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.
      Python
      •
      BSD 2-Clause "Simplified" License
      •20•31•6•0•Updated Jan 9, 2019Jan 9, 2019

    • PCSF_analysis

      Public
      Python
      •1•3•2•0•Updated May 18, 2017May 18, 2017

    • HD-iPSC-Consortium-NN

      Public
      Code and data for the 2017 Nature Neuroscience paper by the HD iPSC Consoritum
      Python
      •2•6•0•0•Updated Mar 4, 2017Mar 4, 2017

    • galaxytools

      Public
      Python
      •0•0•0•0•Updated Jan 6, 2017Jan 6, 2017

    • chipsequtil

      Public archive
      Collection of utilities for chipseq and short read analysis
      Python
      •3•3•0•0•Updated Mar 16, 2016Mar 16, 2016