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@remap-cisreg ReMap

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    5 repositories

    • remap-pipeline

      Public
      As the ReMap project expands dramatically and regulatory catalogs for other species are requested, it becomes essential to enable joint efforts between the ReMap team and external teams. This is essential for future collaborative production efforts. Briefly, our pipelines uses SnakeMake either in a Conda or Singularity environment depending on t…
      Python
      •5•8•2•0•Updated Apr 20, 2022Apr 20, 2022

    • ReMapEnrich

      Public
      ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
      rchip-seqr-packagetranscription-factor-bindingenrichment-analysisgenomic-regions
      HTML
      •5•15•10•1•Updated Feb 2, 2022Feb 2, 2022

    • peakMerge

      Public
      Python
      •0•1•0•0•Updated Sep 3, 2021Sep 3, 2021

    • remap-rest

      Public
      Language agnostic RESTful data access to ReMap data over HTTP
      chip-seqmongodb
      Shell
      •1•1•0•0•Updated Mar 30, 2021Mar 30, 2021

    • remap-docker-images

      Public
      Repository for docker images that are hosted on docker hub
      0•1•0•0•Updated May 15, 2019May 15, 2019