Repositories list

• slimseq

  Public
  Facility management software for high throughput sequencing

  Ruby

  •

  GNU General Public License v2.0

  •1•4•2•5•Updated Oct 19, 2022Oct 19, 2022

• slimarray

  Public
  Lightweight software for microarray facility management

  Ruby

  •

  GNU General Public License v2.0

  •0•2•1•5•Updated Jun 17, 2022Jun 17, 2022

• slimcore

  Public
  Shared resources for SLIMarray, SLIMseq, and future applications

  Ruby

  •1•3•0•3•Updated Jun 17, 2022Jun 17, 2022

• array_pricer

  Public
  Public front-end wizard interface to find #, private back-end to manage # info

  Ruby

  •0•2•0•3•Updated Jun 17, 2022Jun 17, 2022

• GMS

  Public
  Genome Management System

  Ruby

  •1•0•0•1•Updated Jun 26, 2020Jun 26, 2020

• dsPyspark

  Public
  A Pyspark analysis module for Duplex Sequencing

  Python

  •

  MIT License

  •0•1•0•0•Updated Sep 5, 2018Sep 5, 2018

• dswfFakeFASTQ

  Public
  Generate a FASTQ file for testing the Duplex-Sequencing workflow

  Python

  •0•1•0•0•Updated Dec 25, 2016Dec 25, 2016

• kaviarApp

  Public
  Repository for mobile apps to interface with Kaviar - http://db.systemsbiology.net/kaviar/

  Objective-C

  •0•2•0•0•Updated Jun 2, 2016Jun 2, 2016

• ISCA

  Public
  Inheritance State Consistency Analysis

  0•0•0•0•Updated Apr 19, 2016Apr 19, 2016

• Duplex-Sequencing

  Public
  Python

  •

  Other

  •34•0•0•0•Updated Jan 3, 2016Jan 3, 2016

• addama-redirect

  Public
  HTML

  •0•0•0•0•Updated Aug 7, 2015Aug 7, 2015

• ftputils

  Public
  A subset of the FIleUtils and File APIs for FTP

  Ruby

  •

  MIT License

  •0•2•0•0•Updated Jun 19, 2015Jun 19, 2015

• boatman-tasks

  Public
  Boatman tasks used in the ISB Microarray Facility

  Ruby

  •0•3•0•0•Updated May 30, 2012May 30, 2012

• rest-scheduler

  Public
  A REST-like interface to rufus-scheduler

  Ruby

  •1•1•0•0•Updated Jul 15, 2011Jul 15, 2011

• Jobba

  Public
  Job progress monitor with Rails 3 and SproutCore

  Ruby

  •0•1•0•0•Updated Jul 15, 2011Jul 15, 2011

• slimcore_authorizer

  Public
  Authentication using RubyCAS-server and user and lab group management via SLIMcore

  Ruby

  •1•3•0•0•Updated Jul 13, 2011Jul 13, 2011

• array_pipelines

  Public
  Microarray mini-pipelines with SLIMarray as a data source

  JavaScript

  •

  GNU General Public License v2.0

  •0•2•1•0•Updated Jul 8, 2011Jul 8, 2011

• hybridization_scheduler

  Public
  Microarray hybridization scheduler using SproutCore and Ruby on Rails 3

  JavaScript

  •0•5•1•0•Updated Jul 7, 2011Jul 7, 2011

• naming_schemer

  Public
  Rails plugin to manage naming schemes (controlled vocabulary) associated with samples

  Ruby

  •0•2•0•0•Updated Jul 6, 2011Jul 6, 2011

• slimsolo_authorizer

  Public
  Authentication, users and lab groups within application database, for standalone deployment.

  Ruby

  •0•2•0•0•Updated Jul 6, 2011Jul 6, 2011

• rubycas-server

  Public
  Provides a single sign-on solution for web applications, implementing the server-end of JA-SIG's CAS protocol.

  Ruby

  •

  Other

  •269•2•0•0•Updated Jun 3, 2011Jun 3, 2011

• boatman

  Public
  Ruby DSL for ferrying around and manipulating files

  Ruby

  •

  MIT License

  •1•3•0•0•Updated Apr 19, 2011Apr 19, 2011

• netzke-basepack

  Public
  Pre-built Netzke widgets for your RIA

  Ruby

  •72•2•0•0•Updated Oct 15, 2010Oct 15, 2010