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@tcflab Friedrich Lab at UW-Madison

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    7 repositories

    • wisconsin_cryptic_lineages

      Public
      Github repository to accompany the manuscript: Tracing the origin of SARS-CoV-2 Omicron-like Spike sequences detected in wastewater
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jun 2, 2023Jun 2, 2023

    • protocols

      Public
      Shared protocols used for Friedrich Lab projects.
      Python
      •1•1•0•0•Updated May 5, 2023May 5, 2023

    • barcoded_flu_analysis

      Public
      Protocols and scripts used for WGS and amplicon sequencing of barcoded influenza A samples
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Jun 30, 2022Jun 30, 2022

    • H7N9_evolution_in_mammals

      Public
      To accompany the manuscript entitled "Stochastic processes within hosts constrain adaptation of wildtype H7N9 avian influenza viruses to mammalian hosts"
      Perl
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • ZIKVBC_HostCycling

      Public
      Repository for scripts to process, analyze, and visualize NGS data from barcoded ZIKV
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 29, 2022Jan 29, 2022

    • Quantifying-the-limits-of-accurate-detection-of-within-host-RNA-virus-variants-by-deep-sequencing

      Public
      R
      •0•1•0•0•Updated Jun 19, 2018Jun 19, 2018

    • LinkGe

      Public
      Perl
      •0•0•0•0•Updated Jun 19, 2018Jun 19, 2018