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fix(create_cdss): Handle different translation tables in meta mode #301

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merged 1 commit into from
Jul 10, 2024

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ohickl
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@ohickl ohickl commented Jul 9, 2024

Update CDS creation process to use the translation table that pyrodigal
used for gene prediction in meta mode. This ensures accurate translation
of genes across different genetic codes.

Previously, metagenome contigs predicted with translation table 4 were
incorrectly translated with table 11, resulting in amino acid sequences
with numerous internal stop codons ('*').

The gene translation in CDS creation has been updated to handle the meta mode where pyrodigal uses the translation table the gene was predicted with. This change ensures accurate translation of genes in different modes.
@oschwengers oschwengers added the bug Something isn't working label Jul 10, 2024
@oschwengers oschwengers merged commit c93c3f1 into oschwengers:main Jul 10, 2024
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@oschwengers
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Hi @ohickl ,
thank you very much for reporting and fixing this! I wasn't ware of it.

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