Unable to install library(outbreakinfo)

[carlottaolivero]

Hi,
the comand install.packages("outbreakinfo") doesn't work .
The warning message is that the "outbreakinfo" is not available on that version of R.

I currently use Rstudio 2022.07.2, R version 4.2.1

Many thanks for the help!
Carlotta

[malkuzweny]

Hi Carlotta,

Use this line of code to install the package instead:
devtools::install_github("outbreak-info/R-outbreak-info")

Let us know if the issue persists. Thanks!

[carlottaolivero]

That worked, thanks!
I still have a problem in autenticate myself into GISAID using authenticateUser() even if I have GISAID login.

Unfortunatelly I am not an expert on R, I don't know the meaning of:
#> Warning: replacing previous import 'crayon::%+%' by 'ggplot2::%+%' when loading
#> 'outbreakinfo'
#> Warning: replacing previous import 'jsonlite::flatten' by 'purrr::flatten' when
#> loading 'outbreakinfo'

looking for help on google, thanks a lot anyway!

[malkuzweny]

Could you open a new issue with more details on what error message you're receiving when using authenticateUser? Thanks.

[Dhihram]

Hi, I've installed using devtools::install_github("outbreak-info/R-outbreak-info"), but it is an error. The message is below:

── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────
Error: Failed to install 'outbreakinfo' from GitHub:
lazy-load database 'C:/*****/4.3/prettyunits/R/prettyunits.rdb' is corrupt
In addition: There were 13 warnings (use warnings() to see them)