Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

change specimen type and sample type to list #121

Merged
merged 2 commits into from
May 27, 2020
Merged

Conversation

Buwujiu
Copy link
Contributor

@Buwujiu Buwujiu commented May 26, 2020

No description provided.

@Buwujiu Buwujiu self-assigned this May 26, 2020
@Buwujiu Buwujiu requested review from blabadi and lepsalex May 26, 2020 20:55
@blabadi
Copy link
Contributor

blabadi commented May 26, 2020

can you update at least one analysis in the song payloads fixtures to have multiple samples or/and specimens to cover the new logic, I don't think that is covered the way tests are now

@Buwujiu
Copy link
Contributor Author

Buwujiu commented May 27, 2020

can you update at least one analysis in the song payloads fixtures to have multiple samples or/and specimens to cover the new logic, I don't think that is covered the way tests are now

this test covers the logic where there are multiple specimen and multiple samples: AnalysisCentricDocumentConverterTest - testGetDonors_multi_donor

@Buwujiu Buwujiu requested a review from blabadi May 27, 2020 18:22
Copy link
Contributor

@blabadi blabadi left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

please squash the commits

@Buwujiu Buwujiu merged commit 26243a4 into develop May 27, 2020
@Buwujiu Buwujiu deleted the 113-fix-donor-field branch May 27, 2020 18:49
@blabadi blabadi mentioned this pull request Jun 10, 2020
blabadi added a commit that referenced this pull request Jun 10, 2020
release 3.0.0
#116 fix junit 5 version to avoid conflicts in class path
#118 update analysis centric index fields, add data_type, rename files filed to file, remove data_path and metadata_path from repositories field
#119 kafka stream listener configurable status (PUBLISHED, SUPPRESSED, wtv)
#120 add support for cram/crai index files
#121 change specimen type and sample type to list
#127 update mappings fields
#129 rename format to file_type
#131 remove last_modified from file centric mapping
#132 rename file-id to file-object_id
#135 fix index analysis response message
#136 add maven formatter
#139 add ability to remove document by analysis id from analysis_centric
#143 add dynamic info indexed field support to donor, Specimen, sample, and file
update test document to cover that for file centric document
#145 fix NPE for analysis centric index
# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants