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move weight-at-age plot functions to hake-assessment #5

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kellijohnson-NOAA opened this issue Feb 3, 2020 · 0 comments
Open
4 tasks

move weight-at-age plot functions to hake-assessment #5

kellijohnson-NOAA opened this issue Feb 3, 2020 · 0 comments
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action: code Work on the code topic: R functions Related to code in the R directory type: enhancement New feature or request
Milestone
2023

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@kellijohnson-NOAA
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kellijohnson-NOAA commented Feb 3, 2020 •
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Plots are used in the assessment and the code should be housed there, see pacific-hake/hake-assessment#459.

  • modularize weight-at-age functions
  • move plotting code over to hake-assessment
  • write out csvs for all data frames that are needed so they can be moved annually to hake-assessment if they don't contain confidential data.
  • code to move wtatage_all_samplesize.csv to hake-assessment/data
kellijohnson-NOAA added a commit that referenced this issue Feb 3, 2020
@kellijohnson-NOAA
add figure - see #5 where this code needs to be moved
0945f53 
Needed the numbers figure for the assessment and I don't
have time to move the code right now. The figure is not
matching with the figure that AMB uploaded last year. I emailed
him for the matching spreadsheet, which one can easily do a
pivot table in.
kellijohnson-NOAA added a commit to pacific-hake/hake-assessment that referenced this issue Feb 3, 2020
@kellijohnson-NOAA
Work on #631 to automate heat map
b329e41 
* fixed the last year of the model issue to be the last year of the
data now that SS can use the last year of data as empirical.

* added a new line of zero values for no interpolation in 2019,
next year fill this in from the matrix of sample sizes

* Allow for longterm.mean.ages to be NULL, which will take the first
year of the matrix and assume that it is the mean.

* This would all be better if it were plotted using the raw data
rather than the matrix input into SS.
pacific-hake/hakedataUSA#5 will move the code for the 2021 assessment
@kellijohnson-NOAA kellijohnson-NOAA added topic: R functions Related to code in the R directory action: code Work on the code type: enhancement New feature or request labels Dec 15, 2021
@kellijohnson-NOAA kellijohnson-NOAA added this to the 2022 milestone Jan 14, 2022
@kellijohnson-NOAA kellijohnson-NOAA modified the milestones: 2022, 2023 Dec 12, 2022
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action: code Work on the code topic: R functions Related to code in the R directory type: enhancement New feature or request
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