Figure 2 (Fuller et al. 2017) of fisheries connectivity

[kellijohnson-NOAA]

Idea

While reading Fuller et al. (2017) I thought that Figure 2 would be a great addition to our stock assessments. The figure highlights the sablefish fishery but I think that we could get the code to generate the figure from @emfuller and include more groundfish species for comparisons.

Proposed solution

• use this issue to ask @emfuller and @jameals if there is code to create the figure and the data that went into it, it might be in cnh?
• create a function that takes groups as input and outputs the figure
  • figure
  • caption
  • alternative text
• add a placeholder in sa4ss for the figure

Potential problems

• confidential data
• complexity of the Figure might be hard to code?
• how to choose categories, maybe make a standard set of groups that each new species is compared to
• where to store the code

Acknowledgements

Thank you to @emfuller et al. for making such a beautiful figure that inspired something in me, otherwise why would I propose more work and even longer documents for myself 😆.

[emfuller]

@kellijohnson-NOAA what a wonderful note to get! Nothing is better than hearing this might be actually useful visualization for stock assessments! I will take a shot at digging up my code - but I used the R package igraph. Lots of tweaking to set up the node locations - but what you need is a network, edge weights, node sizes and node names.

[kellijohnson-NOAA]

Awesome, thank you so much for taking the time to dig through your code, your efforts are much appreciated. In the mean time I will look into igraph.

[jameals]

hi! i will respond via git later but fyi we are advancing and modernizing this work here: https://github.com/jameals/cciea_networks networks were in this year's status report to the PFMC and will also reside on the CCIEA webpage https://www.pcouncil.org/documents/2021/02/i-1-a-iea-team-report-1.pdf/

…

On Thu, Oct 7, 2021 at 1:12 PM Kelli Johnson ***@***.***> wrote: Awesome, thank you so much for taking the time to dig through your code, your efforts are much appreciated. In the mean time I will look into igraph. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#51 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AC4YERCSXSPMDIF2SG7D5MTUFX5J7ANCNFSM5FQEKPYA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

-- *********************************************************** Due to COVID19, I am on a fluid and dynamic teleworking schedule. Sorry for delayed responses. *********************************************************** Jameal Samhouri [he/him] Conservation Biology Division Ecosystem Science Program Manager Northwest Fisheries Science Center National Marine Fisheries Service National Oceanic and Atmospheric Administration 2725 Montlake Blvd. E Seattle, WA 98112 USA Office Phone: 206-302-1740 (not checked during COVID) Cell Phone: 206-962-0984 jamealsamhouri.com