cannot have DataFrames and 0.7, so test and require 1.0 or better

phaverty · Sep 21, 2018 · dd43f14 · dd43f14
1 parent bc1aed6
commit dd43f14
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diff --git a/.travis.yml b/.travis.yml
@@ -5,7 +5,7 @@ os:
   - osx
 
 julia:
-  - 0.7
+  - 1.0
   - nightly
 
 notifications:

diff --git a/REQUIRE b/REQUIRE
@@ -1,4 +1,4 @@
-julia 0.7
+julia 1.0
 GenomicFeatures 1.0.0
 RLEVectors 0.7.1
 DataFrames 0.0.1

diff --git a/benchmark/.#benchmark.R b/benchmark/.#benchmark.R
diff --git a/benchmark/benchmark.jl b/benchmark/benchmark.jl
@@ -19,12 +19,12 @@ macro timeit(ex)
   end
 end
 
-#bam_file = "GSE25840_GSM424320_GM06985_gencode_spliced.head.bam"
+bam_file = "GSE25840_GSM424320_GM06985_gencode_spliced.head.bam"
 #bam_path = joinpath(dirname(pathof(GenomicVectors)),"BAM", bam_file)
-#bam_path = "/Users/phaverty/R1039_LIB3086_SAM636333_L4_NXG2275.analyzed.bam"
+bam_path = "/Users/phaverty/R1039_LIB3086_SAM636333_L4_NXG2275.analyzed.bam"
 bam_path = "/Users/phaverty/GSE25840_GSM424320_GM06985_gencode_spliced.head.bam"
 reader = open(BAM.Reader, bam_path)
-gr = GenomicRanges("hg19", reader)
+@time gr = GenomicRanges("hg19", reader)
 
 timings = DataFrame()
 timings[:language] = "julia"
-Original file line number
+Diff line change
@@ Expand Up / @@ -5,7 +5,7 @@ os: @@
       - osx
     julia:
-      - 0.7
+      - 1.0
       - nightly
     notifications:
@@ Expand Down @@