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Merge pull request #34 from phylo42/blinard-BIOINFO-patch-3
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nromashchenko authored Jul 17, 2024
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Expand Up @@ -12,6 +12,18 @@ For more information about phylo-k-mers, see our papers: [one](https://academic.
If you want to experiment with phylo-k-mers and write some code, check out our [examples](https://github.com/phylo42/I2L/tree/master/examples) to see how to use the code of IPK.


## Rapid installation via Bioconda
It is advised to install the package in a new environment, because our C++ dependencies are strict and may clash with other packages requiring, for instance, libboost.
We also recommend to use `mamba, which is more faster in solving environment dependencies.
```
conda create -n my_env
conda activate my_env
conda config --set channel_priority strict
mamba install ipk
```

## References

---
[1] Romashchenko, Nikolai et al. EPIK: precise and scalable evolutionary placement with informative k-mers. Bioinformatics, 39.12 (2023), btad692.

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