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Don't run docker commands as root #14

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pveber opened this issue Sep 16, 2016 · 0 comments
Open

Don't run docker commands as root #14

pveber opened this issue Sep 16, 2016 · 0 comments

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@pveber
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pveber commented Sep 16, 2016

Currently all commands executed through docker are executed as root (in the container), which has (at least) two drawbacks:

  • it creates output files owned by root on the "host" file system
  • some tools (like meme in mpi mode) refuse to be run as root.

One solution would be to execute command through docker after changing user in the container, choosing the same uid than the (bistro) process owner.
sylverebastien added a commit to sylverebastien/bistro that referenced this issue Sep 19, 2016
@sylverebastien
bioinfo/Meme_suite: fixed meme-chip options
05f6bf5 
- missing output directory option
- disabled -meme-p option because of pveber#14, because mpi-run refuses to run as root
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@pveber