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Fix source root not recognized #9661

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Run time

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Job	Run time
run / pypy-3.9 / Linux	3m 11s
run / 3.9 / Linux	5m 42s
run / pypy-3.10 / Linux	3m 15s
run / 3.10 / Linux	5m 33s
run / 3.11 / Linux	4m 48s
run / 3.12 / Linux	7m 6s
run / 3.13 / Linux	5m 33s
run / 3.9 / Windows	5m 42s
run benchmark / 3.13 / Linux	44s
run / 3.9 / macOS	2m 34s
process / coverage	19s
run / 3.10 / Windows	5m 33s
run / 3.11 / Windows	4m 48s
run / 3.12 / Windows	4m 54s
run / 3.13 / Windows	5m 44s
	1h 5m 26s