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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Source for the QIIME 2 Framework (Q2F).

    Python 503 244

  2. distributions distributions Public

    Makefile 2 6

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 25

  4. docs docs Public archive

    Python 21 58

Repositories

Showing 10 of 78 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 2 0 Updated May 18, 2025
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 2 BSD-3-Clause 6 4 6 Updated May 18, 2025
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    qiime2/q2view’s past year of commit activity
    TypeScript 1 BSD-3-Clause 1 2 1 Updated May 16, 2025
  • qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 0 Updated May 14, 2025
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs’s past year of commit activity
    Makefile 0 0 4 0 Updated May 13, 2025
  • moving-pictures-tutorial Public

    Moving Pictures Tutorial source

    qiime2/moving-pictures-tutorial’s past year of commit activity
    Makefile 0 0 0 0 Updated May 13, 2025
  • q2-mystery-stew Public

    This plugin exists to define integration tests between interfaces and the framework.

    qiime2/q2-mystery-stew’s past year of commit activity
    Python 0 BSD-3-Clause 6 0 0 Updated May 8, 2025
  • q2-quality-filter Public

    Quality filtering for QIIME2

    qiime2/q2-quality-filter’s past year of commit activity
    Python 1 BSD-3-Clause 16 3 0 Updated May 8, 2025
  • q2-vsearch Public

    vsearch plugin for QIIME 2

    qiime2/q2-vsearch’s past year of commit activity
    Python 6 BSD-3-Clause 23 8 0 Updated May 8, 2025
  • q2templates Public

    Design template package for QIIME 2 Plugins

    qiime2/q2templates’s past year of commit activity
    Python 4 BSD-3-Clause 16 0 0 Updated May 8, 2025

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