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MAINT: cluster-features-denovo tutorial needs new --p-strand param added #574

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lizgehret opened this issue Feb 20, 2024 · 2 comments
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good first issue Good for newcomers

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@lizgehret
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The 2024.2 release included the following API change to cluster-features-denovo: qiime2/q2-vsearch#90

The vsearch tutorial should be updated to include the newly added --p-strand parameter.

@colinvwood this would be a good one to have @hagenjp work on while I'm OOO.

@lizgehret lizgehret added the good first issue Good for newcomers label Feb 20, 2024
@lizgehret lizgehret added this to 2024.5 Feb 20, 2024
@github-project-automation github-project-automation bot moved this to Backlog in 2024.5 Feb 20, 2024
@lizgehret lizgehret moved this from Backlog to In Analysis in 2024.5 Feb 20, 2024
@colinvwood colinvwood self-assigned this Feb 20, 2024
@hagenjp
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hagenjp commented Mar 27, 2024

Hi @lizgehret, since this is an optional parameter that we are exposing and we do not have a use case in the tutorials for the non-default "both" option, is there any reason why this parameter should be added in the vsearch tutorial?

@lizgehret
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Hey @hagenjp - in the tutorial, you can include the default --p-strand parameter in the cluster-features-denovo commands, then include a bit of text that describes the non-default use-case. This should be added because it keeps our tutorial up to date with the associated API change!

@hagenjp hagenjp removed this from 2024.5 May 29, 2024
@github-project-automation github-project-automation bot moved this to Backlog in 2024.10 🎃 May 29, 2024
@colinvwood colinvwood moved this from Backlog to In Development in 2024.10 🎃 Jun 13, 2024
@colinvwood colinvwood removed their assignment Jun 20, 2024
@hagenjp hagenjp moved this from In Development to Needs Review in 2024.10 🎃 Oct 1, 2024
@hagenjp hagenjp closed this as completed Oct 3, 2024
@hagenjp hagenjp moved this from Needs Review to Completed in 2024.10 🎃 Oct 3, 2024
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