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Restructure AddSourceTermsMultiGroup#734

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chongchonghe merged 65 commits intodevelopmentquokka-astro/quokka:developmentfrom chong/separate-v2.1quokka-astro/quokka:chong/separate-v2.1Copy head branch name to clipboardSep 7, 2024

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Commits on Sep 1, 2024

• defined AddSourceTermsSingleGroup, first try

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Commits on Sep 2, 2024

• fix bug, all tests passed

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• remove single-group from AddSourceTerms, passed tests

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• simplify

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• rename

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• rename ComputeThermalRadiation

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• Merge branch 'chong/seperate-single-and-multi-group' of https://github.com/quokka-astro/quokka into chong/seperate-single-and-multi-group

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• fix bug

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• Merge branch 'chong/seperate-single-and-multi-group' of https://github.com/quokka-astro/quokka into chong/seperate-single-and-multi-group

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• ignore_unused

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• print

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• remove debug_radiation_Newton_iteration

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• add comments

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Commits on Sep 3, 2024

• add annotation

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• Move add_source_terms to stand-alone files

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• minor

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• minor fix

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• split radiation_system into transport and source terms

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• restructure: 1, define ComputeJacobianForGasAndDust, working

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• restructure: 2. make pass by reference

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• restructure: 3, SolveLinearEqs takes jacobian struct

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Commits on Sep 4, 2024

• revert back to radiation_base.hpp + source_terms_single_group.hpp + source_terms_multi_group.hpp.

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• cleanup

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• reformat radiation_system to the original structure

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• cleanup

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• fix mistake in updating result.Fg

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• add debugging block

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• separate dust and gas in source_terms_single_group.hpp

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• fix GPU error: AMREX_GPU_HOST_DEVICE

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• Merge in github reformatting

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• fix bug in the gas Jacobian

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• Merge branch 'chong/separate-v2.1' of https://github.com/quokka-astro/quokka into chong/separate-v2.1

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• ComputeDustTemperature computes T_d for n=0 and n>0, passing tests

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• restructure: 3, define SolveMatterRadiationEnergyExchange, passing tests

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Commits on Sep 5, 2024

• fix minor bug

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• restructure: 4, SolveMatterRadiationEnergyExchange takes ComputeDustTemperature

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• restructure: 5, SolveMatterRadiationEnergyExchange takes ComputeJacobian

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• Merge branch 'chong/separate-v2.1' of https://github.com/quokka-astro/quokka into chong/separate-v2.1

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• remove trash.hpp

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• fix GPU complie error

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• add ignore_unused

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• define typename JacobianFunc, typename DustTempFunc

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• define p_iteration_failure_counter to replace three counters

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• add full support of iteration_failure_counter and iteration_counter

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• Merge branch 'development' into chong/separate-v2.1

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• fix bugs during mergine

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• pass jacobian by reference

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• rename variables

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Commits on Sep 6, 2024

• minor change

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Commits on Sep 7, 2024

• add comments; no need to rerun tests

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