feat(executor): upgrade to Snakemake v8 #341

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Run time

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Job	Run time
lint-black	8s
lint-check-manifest	11s
docs-sphinx	3m 28s
docker-build	4m 13s
lint-commitlint	10s
lint-dockerfile	7s
lint-flake8	8s
lint-pydocstyle	7s
lint-shellcheck	4s
python-tests	3m 47s
release-docker	0s
	12m 23s