Use a strategy for sequence preprocessing #99
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It was found that Tokenizers for different pLMs work differently under the hood, as such it was necessary to find the correct strategy to provide the sequences to the tokenizers
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It was found that Tokenizers for different pLMs work differently under the hood, as such it was necessary to find the correct strategy to provide the sequences to the tokenizers.
ProtT5 pre-processing (https://github.com/agemagician/ProtTrans) uses whitespaces between the amino acids.
Ankh pre-processing (https://github.com/agemagician/Ankh) does not use whitespaces between the amino acids.