Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Template update #102

Merged
merged 190 commits into from
Jun 23, 2023
Merged

Template update #102

merged 190 commits into from
Jun 23, 2023

Conversation

DLBPointon
Copy link
Contributor

Completing the coding for TreeVal Dev Phase 2

  • Template Updated
  • Added BUSCO
  • Added HiC workflow

DLBPointon and others added 30 commits May 18, 2023 13:57
…on. e,g. Removing input fasta code and replacing with input yaml.
…ds the same check, this fix also optimises this check for both sub-workflows closes #96
…put into respective folders to make downstream ingestion easier
@DLBPointon DLBPointon requested review from priyanka-surana and removed request for priyanka-surana June 20, 2023 09:35
@DLBPointon
Copy link
Contributor Author

DLBPointon commented Jun 20, 2023

Currently fixing longread
Done

Copy link
Contributor

@priyanka-surana priyanka-surana left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thanks for making the changes. Some minor comments. Please fix the linting errors.

Copy link
Contributor

@priyanka-surana priyanka-surana left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Once you get the tests working, a couple other things left to get the PR merge ready.

  • docs/usage.md
  • linting errors
  • Remove/replace enable_conda - this should have been automatically addressed in the template update as well.
  • There is a view statement somewhere

I am not sure why the update was not correctly cascaded to all files. I am noticing a lot of my comments are around this.

@DLBPointon
Copy link
Contributor Author

DLBPointon commented Jun 22, 2023

Only jobs left are the usage.md and getting cooler_cload to work
Fixed Cload and juicer!

@priyanka-surana
Copy link
Contributor

I will do another full review and create tickets for any left over issues.

@priyanka-surana priyanka-surana merged commit 73f53de into dev Jun 23, 2023
@priyanka-surana priyanka-surana deleted the template_update branch June 23, 2023 12:16
DLBPointon pushed a commit that referenced this pull request Sep 7, 2023
# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
Data Issue Issue related to test data documentation Improvements or additions to documentation enhancement New feature or request
Projects
None yet
Development

Successfully merging this pull request may close these issues.

4 participants