Hap

[yumisims]

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/treeval branch on the nf-core/test-datasets repository.
• Make sure your code lints (nf-core lint).
• Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[muffato]

Hi Yumi. Which profile can I use to test this ?

[yumisims]

Hi Matthieu, the test profile is this one https://github.com/sanger-tol/treeval/blob/hap/assets/full_s3_treeval_test.yaml

[yumisims]

have done all required changes

[muffato]

(just pushed two commits directly to fix the alignment (I got the amount of whitespace wrong) and apply prettier to modules.json)

Looks good to me !