Code

Local testing#94

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Merged

DLBPointon merged 29 commits intodevsanger-tol/treeval:devfrom local_testingsanger-tol/treeval:local_testingCopy head branch name to clipboardMay 18, 2023

+461-147

Commits

Commits on May 3, 2023

• Files for local testing

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• new file: assets/local_testing/RunTime.md

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• Updates to directories in local folders

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• Updating for local testing, texts extra channel in treeval.nf

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• linting fix

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• Update linting

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Commits on May 4, 2023

• User request to get rid of assembly name from output file

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Commits on May 11, 2023

• Addition to local testing, adding a representative dataset (all data it local, pipeline runs in sub 3 mins)

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• Small changes

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• Linting Fix

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Commits on May 15, 2023

• Changes to allow for multiple entry points

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Commits on May 16, 2023

• Updates to fix naming by scripts

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• Updates to Gap subworkflow, correcting error in workflow

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• Adding tabix configurations to modules.config, allowing csi output

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Commits on May 17, 2023

• Updates from the nf-core modules repo

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• Fixing modules.json prettier lint

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• Update config

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Commits on May 18, 2023

• Finally fixed gap

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• Minor changes including pipeline_into to treeval_info

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• Linting

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• Updates

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• Updates

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• Linting update

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• Linting

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• Update conf/test.config

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• Update conf/test.config

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• Update conf/test.config

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• Update conf/test_full.config

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• Update subworkflows/local/gap_finder.nf

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