Create Dockerfile

intel/Dockerfile

@@ -0,0 +1,73 @@
+# Build stage with Spack pre-installed and ready to be used
+FROM spack/ubuntu-jammy:0.21 as builder
+
+
+# What we want to install and how we want to install it
+# is specified in a manifest file (spack.yaml)
+RUN mkdir /opt/spack-environment \
+&&  (echo spack: \
+&&   echo '  packages:' \
+&&   echo '    all:' \
+&&   echo '      compiler: [intel@15.0.0]' \
+&&   echo '  specs:' \
+&&   echo '  - boost@1.80.0+log+program_options' \
+&&   echo '  - cmake@3.27.7' \
+&&   echo '  - eigen@3.4.0' \
+&&   echo '  - intel-mkl' \
+&&   echo '  - hdf5@1.14.3' \
+&&   echo '  - netcdf-c@4.9.2+mpi+parallel-netcdf' \
+&&   echo '  - netcdf-cxx4@4.3.1' \
+&&   echo '  - netcdf-fortran' \
+&&   echo '  - openmpi@4.1.6' \
+&&   echo '  - zlib-ng@2.1.4' \
+&&   echo '  concretizer:' \
+&&   echo '    unify: true' \
+&&   echo '  config:' \
+&&   echo '    install_missing_compilers: true' \
+&&   echo '    install_tree: /opt/software' \
+&&   echo '  view: /opt/views/view') > /opt/spack-environment/spack.yaml
+
+# Install the software, remove unnecessary deps
+RUN cd /opt/spack-environment && spack env activate . && spack install --fail-fast && spack gc -y
+
+# install perl URI lib
+RUN apt update && apt install -y libany-uri-escape-perl
+
+# download and install xios
+COPY install-xios.sh .
+RUN spack env activate /opt/spack-environment && bash install-xios.sh
+
+# Strip all the binaries
+RUN find -L /opt/views/view/* -type f -exec readlink -f '{}' \; | \
+    xargs file -i | \
+    grep 'charset=binary' | \
+    grep 'x-executable\|x-archive\|x-sharedlib' | \
+    awk -F: '{print $1}' | xargs strip
+
+# Modifications to the environment that are necessary to run
+RUN cd /opt/spack-environment && \
+    spack env activate --sh -d . > activate.sh
+
+# Bare OS image to run the installed executables
+FROM ubuntu:22.04
+
+COPY --from=builder /opt/spack-environment /opt/spack-environment
+COPY --from=builder /opt/software /opt/software
+COPY --from=builder /xios /xios
+COPY --from=builder /usr /usr
+
+# paths.view is a symlink, so copy the parent to avoid dereferencing and duplicating it
+COPY --from=builder /opt/views /opt/views
+
+RUN { \
+      echo '#!/bin/sh' \
+      && echo '.' /opt/spack-environment/activate.sh \
+      && echo 'exec "$@"'; \
+    } > /entrypoint.sh \
+&& chmod a+x /entrypoint.sh \
+&& ln -s /opt/views/view /opt/view \
+&& apt update && apt install -y ca-certificates python3-dev python3-netcdf4
+
+
+ENTRYPOINT [ "/entrypoint.sh" ]
+CMD [ "/bin/bash" ]