Fix cocycle notebook #34
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Test project | |
| on: | |
| push: | |
| branches: [master] | |
| pull_request: | |
| branches: [master] | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| os: ["ubuntu-latest", "macos-latest"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| git clone https://github.com/martinus/robin-hood-hashing ripser/robinhood | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest-cov Cython | |
| pip install -e ".[testing]" | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest --cov ripser | |
| - name: Upload coverage results | |
| run: | | |
| bash <(curl -s https://codecov.io/bash) | |
| test-conda: | |
| runs-on: macos-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: test | |
| - name: Set up conda | |
| shell: bash -l {0} | |
| run: | | |
| conda install git numpy pandas scipy matplotlib pytest cython | |
| git clone https://github.com/martinus/robin-hood-hashing ripser/robinhood | |
| python -m pip install . | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| pytest . | |
| test-on-windows: | |
| runs-on: windows-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: test | |
| - name: Set up conda | |
| shell: bash -l {0} | |
| run: | | |
| echo -e "[build]\ncompiler=msvc\n" >> setup.cfg | |
| conda install git numpy pandas scipy matplotlib pytest libpython cython | |
| git clone https://github.com/martinus/robin-hood-hashing ripser/robinhood | |
| python -m pip install . | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| pytest . |