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Restore cells_as_circles default to True and add deprecation warning. #184

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LucaMarconato opened this issue Aug 1, 2024 · 1 comment
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@LucaMarconato
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LucaMarconato commented Aug 1, 2024

The PR #179 fixes a problem of radii being nan for Xenium 2.0.0 data #173, and also changes the default value for cells_as_circles from True to False.

Before release we should:

  • revert the default to True
  • add a warning like "the default will change to False in the next release, please pass True explicitly to maintain the current behavior"
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Sounds like a good task to experiment with GitHub Workspace, the new AI tool form GitHub @Zethson.

LucaMarconato added a commit that referenced this issue Aug 1, 2024
This PR is AI generated (Copilot Workspace).

Related to #184

Revert the default value of `cells_as_circles` to `True` and add a deprecation warning.

* Change the default value of the `cells_as_circles` parameter to `None` in the `xenium` function.
* Add a deprecation warning indicating that the default will change to `False` in the next release.
* Add logic to set `cells_as_circles` to `True` if it is `None` and display the deprecation warning.

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For more details, open the [Copilot Workspace session](https://copilot-workspace.githubnext.com/scverse/spatialdata-io/issues/184?shareId=XXXX-XXXX-XXXX-XXXX).
lucas-diedrich pushed a commit to lucas-diedrich/spatialdata-io that referenced this issue Nov 26, 2024
This PR is AI generated (Copilot Workspace).

Related to scverse#184

Revert the default value of `cells_as_circles` to `True` and add a deprecation warning.

* Change the default value of the `cells_as_circles` parameter to `None` in the `xenium` function.
* Add a deprecation warning indicating that the default will change to `False` in the next release.
* Add logic to set `cells_as_circles` to `True` if it is `None` and display the deprecation warning.

---

For more details, open the [Copilot Workspace session](https://copilot-workspace.githubnext.com/scverse/spatialdata-io/issues/184?shareId=XXXX-XXXX-XXXX-XXXX).
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