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... Hi,
So in squidpy, you can feed a library_id to sq.tl.spatial_neghbours function to make sure you build a network per image, with multiple images.
library_id
sq.tl.spatial_neghbours
But how do you account for multiple images in non-graph based spatial functions such as Ripley's statistics (https://squidpy.readthedocs.io/en/stable/api/squidpy.gr.ripley.html) or co-occurence (https://squidpy.readthedocs.io/en/stable/api/squidpy.gr.co_occurrence.html). Do these functions account for multiple images in an adata object? For instance, looking for library_id by default?
Thanks!
first raised on scverse
The text was updated successfully, but these errors were encountered:
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...
Hi,
So in squidpy, you can feed a
library_id
tosq.tl.spatial_neghbours
function to make sure you build a network per image, with multiple images.But how do you account for multiple images in non-graph based spatial functions such as Ripley's statistics (https://squidpy.readthedocs.io/en/stable/api/squidpy.gr.ripley.html) or co-occurence (https://squidpy.readthedocs.io/en/stable/api/squidpy.gr.co_occurrence.html). Do these functions account for multiple images in an adata object? For instance, looking for
library_id
by default?Thanks!
first raised on scverse
The text was updated successfully, but these errors were encountered: