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Issues list

Extend sq.read.visium to standard Visium HD format
#969 opened Mar 6, 2025 by KarolineHoller
1
ligrec producing 0s in the pvalue table
#968 opened Mar 6, 2025 by haiderabbas678
[Request]: update of squidpy in conda
#963 opened Feb 27, 2025 by tamuanand
spatial_autocorr uses all the cores
#957 opened Feb 18, 2025 by GloriaLiu28
1
Question regarding the zscore matrix
#953 opened Feb 14, 2025 by Huimin721
understand centrality scores
#951 opened Feb 6, 2025 by z-spider
Error with delaunay=True
#946 opened Jan 24, 2025 by Thapeachydude
significance of same dots changes based on plotted clusters in sq.pl.ligrec
#945 opened Jan 24, 2025 by t-a-m-i
NotImplementedError: The legacy implementation is no longer supported - trying to install and import squidpy
#937 opened Jan 20, 2025 by Mdack1
2
How to read most recent 10x 5k prime xenium data?
#936 opened Jan 14, 2025 by Yijia-Jiang
1
Error in import squidpy: cannot import name 'SparseCSCView' from 'anndata._core.views'
#928 opened Dec 11, 2024 by diego-iac
1
Consider switching to TrustedPublishing for PyPI uploads
#927 opened Dec 10, 2024 by grst
Handling Multiple Cells Sharing the Same Coordinates in Squidpy Neighborhood Analysis
#925 opened Dec 7, 2024 by aboutfanfan
@giovp
Integration Testing CI Test Failure on python 3.10
#924 opened Dec 6, 2024 by scverse-bot
Receptor-ligand analysis cannot be reproduced
#922 opened Dec 2, 2024 by Amberzhang66
@michalk8
Latest version mismatch b/w pypi and conda
#920 opened Nov 27, 2024 by abs51295
@giovp
2
[BUG] label harmonization across blocks
#918 opened Nov 27, 2024 by melonora
1
squidpy (non-graph) spatial statistics for multiple images
#917 opened Nov 26, 2024 by mezwick
@giovp
Numba njit warning (nopython is set for njit and is ignored)
#916 opened Nov 25, 2024 by BenCaiello
@michalk8
Delegate plots to spatialdata-plot
#912 opened Nov 8, 2024 by LucaMarconato
4
Add parameter to sliding_window to end up with windows of (approximately) same number of cells enhancement ✨ New feature or request feature PR introduces a new feature graph 🕸️ squidpy2.0 Everything releated to a Squidpy 2.0 release
#908 opened Nov 4, 2024 by timtreis
2
Extend monkeybread neighbourhood to include n>1 cells enhancement ✨ New feature or request feature PR introduces a new feature graph 🕸️ squidpy2.0 Everything releated to a Squidpy 2.0 release
#905 opened Oct 29, 2024 by timtreis
2
Add SpaGFT-like method for identification of SVGs enhancement ✨ New feature or request graph 🕸️ squidpy2.0 Everything releated to a Squidpy 2.0 release
#901 opened Oct 15, 2024 by timtreis
@LLehner
How to draw co_occurrence plot with specific distance in x-axis?
#899 opened Oct 11, 2024 by Zhaowado
@giovp
CosMx FOVs being skipped
#894 opened Oct 2, 2024 by jamesboot
@michalk8
1
ProTip! What’s not been updated in a month: updated:<2025-02-17.