Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Question regarding the zscore matrix #953

Open
Huimin721 opened this issue Feb 14, 2025 · 0 comments
Open

Question regarding the zscore matrix #953

Huimin721 opened this issue Feb 14, 2025 · 0 comments

Comments

@Huimin721
Copy link

Dear team,

Thanks so much for developing the outstanding tool. I have two qeustions regarding adata.uns['cell_type_nhood_enrichment']['zscore'].

  1. Are the rownames and colnames of the zscore matrix
    adata.obs["celltype"].cat.categories.tolist()
    ?
  2. what is the difference between Acluster(row)--Bcluster(column) and Acluster(column)--Bcluster(row)?

Thanks so much and please let me know if this is not clear.

Best,
Huimin

# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant