restore after data lost + significant revision of frag.edge.weight #135
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release', windows_32_or_64: '64'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| # Windows binary paths to allow linking | |
| CIBW_ENVIRONMENT_WINDOWS: LIB="c://glpk//w64;c://lpsolve" INCLUDE="c://glpk//src;c://" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - name: Install Dependencies (Windows) | |
| run: choco install glpk pandoc rtools | |
| if: matrix.config.os == 'windows-latest' | |
| - name: Install Dependencies (Linux) | |
| run: sudo apt-get install libglpk-dev libglpk40 libc6 pandoc libcurl4-openssl-dev | |
| if: matrix.config.os == 'ubuntu-20.04' | |
| - name: Install Dependencies (macOS) | |
| run: brew install pandoc | |
| if: matrix.config.os == 'macOS-latest' | |
| - name: Install R dependencies | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck")) | |
| remotes::install_cran("BiocManager") | |
| BiocManager::install("RBGL") | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_github("lcolladotor/biocthis") | |
| biocthis::use_bioc_github_action() | |
| shell: Rscript {0} | |
| - name: Install igraph (macOS) | |
| run: remotes::install_github("igraph/rigraph") | |
| if: matrix.config.os == 'macOS-latest' | |
| shell: Rscript {0} | |
| - name: Install igraph (Linux) | |
| run: remotes::install_github("igraph/rigraph") | |
| if: matrix.config.os == 'ubuntu-20.04' | |
| shell: Rscript {0} | |
| - name: Install igraph (Windows) | |
| run: install.packages("igraph", type="win.binary", verbose=TRUE) | |
| if: matrix.config.os == 'windows-latest' | |
| shell: Rscript {0} | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") | |
| shell: Rscript {0} | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: covr | |
| - name: Test coverage | |
| run: covr::codecov() | |
| shell: Rscript {0} | |