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Minor edit to help message
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shaunmahony committed May 27, 2022
1 parent 160a6a4 commit 49cf9da
Showing 1 changed file with 2 additions and 2 deletions.
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Expand Up @@ -336,7 +336,7 @@ public SeqUnwinderConfig(String[] arguments) throws IOException {
}
}

//Minimum number of sites to consitute a subclass
//Minimum number of sites to constitute a subclass
minSubClassSize = Args.parseInteger(args, "minsubclass", 200);

//Check if any subclasses have less the minimum number of allowed training instances
Expand Down Expand Up @@ -585,7 +585,7 @@ public static String getSeqUnwinderArgsList(){
"\t--maxk <int>: Maximum length of k-mer (default = 5)\n" +
"\t--r <value>: Regularization constant (default = 10)\n" +
"\t--x <int>: Number of folds for cross validation, default = 3.\n" +
"\t--minsubclass <int>: minimum number of sites to make a subclass"+
"\t--minsubclass <int>: minimum number of sites to make a subclass\n"+
"\t--mergelow: Flag to merge subclasses with less than \"minsubclass\" sites with other relevant classes. By default, all subclasses with less that 200 sites are removed. \n" +
" Other SeqUnwinder options (Highly recommend using defaul options): \n"+
"\t--minscanlen <value>: Minimum length of the window to scan K-mer models. Default=8.\n"+
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