[minor] fix pyproject.toml, remove setup.py, and update README.md

README.md

@@ -26,14 +26,14 @@ SeQUeNCe requires [Python](https://www.python.org/downloads/) 3.8 or later. You
 pip install sequence
 ```
 
-Or, you may install from source:
+For [development mode](https://setuptools.pypa.io/en/latest/userguide/development_mode.html) (a.k.a. editable install):
 ```
 git clone https://github.com/sequence-toolbox/SeQUeNCe.git
 cd SeQUeNCe
-pip install --editable .
+pip install --editable . --config-settings editable_mode=strict
 ```
 
-Note: With `--editable`, any changes you make to the package code are immediately reflected when you import the package and this greatly speeds up the development process. You are free to skip the `--editable` option.
+Note: For issues related to editable install, see [link](https://stackoverflow.com/questions/76213501/python-packages-imported-in-editable-mode-cant-be-resolved-by-pylance-in-vscode).
 
 ## Citation
 Please cite us, thank you!

pyproject.toml

@@ -1,11 +1,32 @@
 [project]
 name = "sequence"
+authors = [
+    {name = "Xiaoliang Wu", email = "xwu64@hawk.iit.edu"},
+    {name = "Joaquin Chung", email = "chungmiranda@anl.gov"},
+    {name = "Alexander Kolar", email = "akolar@anl.gov"},
+    {name = "Alexander Kiefer", email = "akiefer@iu.edu"},
+    {name = "Eugene Wang", email = "eugenewang@yahoo.com"},
+    {name = "Tian Zhong", email = "tzh@uchicago.edu"},
+    {name = "Rajkumar Kettimuthu", email = "kettimut@mcs.anl.gov"},
+    {name = "Martin Suchara", email = "msuchara@anl.gov"},
+]
 version = "0.6.3"
 description = "Simulator of QUantum Network Communication (SeQUeNCe) is an open-source tool that allows modeling of quantum networks including photonic network components, control protocols, and applications."
 readme = "README.md"
 requires-python = ">=3.8"
 
+[tool.setuptools.dynamic]
+dependencies = {file = ["requirements.txt"]}
+
+[tool.setuptools]
+packages = ['sequence', 'sequence.app', 'sequence.kernel', 'sequence.components',
+            'sequence.network_management', 'sequence.entanglement_management', 'sequence.qkd',
+            'sequence.resource_management', 'sequence.topology', 'sequence.utils', 'sequence.gui']
+
+[tool.setuptools.package-data]
+sequence = ["gui/user_templates.json", "gui/default_params.json", "gui/starlight.json"]
+
 [project.urls]
-homepage = "https://github.com/sequence-toolbox/SeQUeNCe"
-documentation = "https://sequence-toolbox.github.io/"
-issues = "https://github.com/sequence-toolbox/SeQUeNCe/issues"
+Homepage = "https://github.com/sequence-toolbox/SeQUeNCe"
+Documentation = "https://sequence-toolbox.github.io/"
+Issues = "https://github.com/sequence-toolbox/SeQUeNCe/issues"

requirements.txt

@@ -1,5 +1,4 @@
 numpy>=1.22
-scipy<=1.10.1
 matplotlib
 dash>=1.20.0
 dash-core-components