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updates links in schedule
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Geert van Geest committed Aug 29, 2024
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| block | start | end | subject |
|--------- |---------- |---------- |-------------------------------- |
| block 1 | 9:00 AM | 10:30 AM | [Introduction](../day1/introduction) |
| block 1 | 9:00 AM | 10:30 AM | [Introduction](day1/introduction.md) |
| | 10:30 AM | 11:00 AM | BREAK |
| block 2 | 11:00 AM | 12:30 PM | [Setup](../day1/server_login) & [Reproducibility](../day1/reproducibility) |
| block 2 | 11:00 AM | 12:30 PM | [Setup](day1/server_login.md) & [Reproducibility](day1/reproducibility.md) |
| | 12:30 PM | 1:30 PM | BREAK |
| block 3 | 1:30 PM | 3:00 PM | [Read alignment - basics](../day1/alignment) |
| block 3 | 1:30 PM | 3:00 PM | [Read alignment - basics](day1/alignment.md) |
| | 3:00 PM | 3:30 PM | BREAK |
| block 4 | 3:30 PM | 5:00 PM | [Read alignment - advanced](../day1/alignment_advanced) |
| block 4 | 3:30 PM | 5:00 PM | [Read alignment - advanced](day1/alignment_advanced.md) |

## Day 2

| block | start | end | subject |
|--------- |---------- |---------- |-------------------------- |
| block 1 | 9:00 AM | 10:30 AM | [Variant calling - preparation](../day2/variant_calling_preparation) |
| block 1 | 9:00 AM | 10:30 AM | [Variant calling - preparation](day2/variant_calling_preparation.md) |
| | 10:30 AM | 11:00 AM | BREAK |
| block 2 | 11:00 AM | 12:30 PM | [Variant calling](../day2/variant_calling) |
| block 2 | 11:00 AM | 12:30 PM | [Variant calling](day2/variant_calling.md) |
| | 12:30 PM | 1:30 PM | BREAK |
| block 3 | 1:30 PM | 3:00 PM | [Filtering & evaluation](../day2/filtering_evaluation) & [Visualisation](../day2/visualisation) |
| block 3 | 1:30 PM | 3:00 PM | [Filtering & evaluation](day2/filtering_evaluation.md) & [Visualisation](day2/visualisation.md) |
| | 3:00 PM | 3:30 PM | BREAK |
| block 4 | 3:30 PM | 5:00 PM | [Annotation](../day2/annotation) |
| block 4 | 3:30 PM | 5:00 PM | [Annotation](day2/annotation.md) |

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