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[r] Remove the unused fragment_count accessor (#3054)
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* [r] Remove unused `fragment_count` method

* roxygenize

* DESCRIPTION and NEWS.md
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johnkerl authored Sep 25, 2024
1 parent a5961fa commit 505c012
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2 changes: 1 addition & 1 deletion apis/r/DESCRIPTION
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Expand Up @@ -6,7 +6,7 @@ Description: Interface for working with 'TileDB'-based Stack of Matrices,
like those commonly used for single cell data analysis. It is documented at
<https://github.com/single-cell-data>; a formal specification available is at
<https://github.com/single-cell-data/SOMA/blob/main/abstract_specification.md>.
Version: 1.14.99
Version: 1.14.99.1
Authors@R: c(
person(given = "Aaron", family = "Wolen",
role = c("cre", "aut"), email = "aaron@tiledb.com",
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23 changes: 23 additions & 0 deletions apis/r/NEWS.md
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@@ -1,5 +1,28 @@
# Unreleased

## Changes

* Remove unused `fragment_count` accessor [#3054](https://github.com/single-cell-data/TileDB-SOMA/pull/3054)

# tiledbsoma 1.14.1

## Changes

* Fixes a Python-only bug [#3013](https://github.com/single-cell-data/TileDB-SOMA/pull/3013)

# tiledbsoma 1.14.0

## Changes

* New `resize` and `tiledbsoma_upgrade_shape` accessors as part of the [new-shape project](https://github.com/single-cell-data/TileDB-SOMA/issues/2407)
* Make use of timestamp ranges in libtiledbsoma
* Simplify timestamp ranges; strengthen assumptions about `tiledb_timestamp`
* Use cached timestamps in `$write()` and `$create()`
* Fix bug in blockwise iteration
* Lay groundwork for cached SOMA contexts within objects rather than re-creating contexts
* SOMA context objects are used throughout SOMA object creation
* Add value-checking for `axis` parameter when initializing blockwise reads

# tiledbsoma 1.13.1

## Changes
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7 changes: 0 additions & 7 deletions apis/r/R/TileDBArray.R
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Expand Up @@ -291,13 +291,6 @@ TileDBArray <- R6::R6Class(
#' @return A character vector with the array index (dimension) names
index_column_names = function() {
self$dimnames()
},

#' @description Get number of fragments in the array (lifecycle: maturing)
fragment_count = function() {
tiledb::tiledb_fragment_info_get_num(
tiledb::tiledb_fragment_info(self$uri)
)
}
),

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1 change: 0 additions & 1 deletion apis/r/man/SOMAArrayBase.Rd

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11 changes: 0 additions & 11 deletions apis/r/man/TileDBArray.Rd

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4 changes: 4 additions & 0 deletions apis/r/man/soma_context.Rd

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