feat: added generic config workflow profile

snakemake · Apr 24, 2024 · 50207fa · 50207fa
1 parent a422f90
commit 50207fa
Showing 1 changed file with 19 additions and 0 deletions.
diff --git a/setup/tutorial/profile/config.yaml b/setup/tutorial/profile/config.yaml
@@ -0,0 +1,19 @@
+default-resources:
+  slurm_partition=barnard
+
+set-resources:
+    bwa_map:
+        runtime: 5 # real scenarios will take more
+        mem_mb_per_cpu: 1800
+
+    samtools_sort:
+        runtime: 5
+        mem_mb_per_cpu: 1800
+
+    samtools_index:
+        runtime: 5
+        mem_mb_per_cpu: 1800
+
+    bcftools_call:
+        runtime: 15
+        mem_mb_per_cpu: 1800