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feat: introduced slides about actual deployment in 'Selecting_Workflo…
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…w' slide set
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cmeesters committed Apr 13, 2024
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Expand Up @@ -87,7 +87,29 @@ \subsection{The Snakemake Workflow Catalogue}
\end{enumerate}
\end{frame}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{frame}[fragile]
\frametitle{Deployment II - Creating an Environment Fork}
Instead of creating environment from scratch we can clone one:
\begin{lstlisting}[language=Bash, style=Shell]
$ mamba create -n <name of new env> --clone snakemake
\end{lstlisting}
This should clone the \altverb{snakemake} environment with all necessary tools!
\pause
\begin{task}
Pick one workflow from the catalogue, create a new environment with a corresponding name, e.\,g. \altverb{rna-seq-star}. Activate it. Then, install \altverb{snakedeploy}.
\end{task}
\pause
\end{frame}

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\begin{frame}[fragile]
\frametitle{Deployment III - Let's do it!}
Follow step 2 of a selected workflow usage instructions:
\begin{center}
\includegraphics[width=0.6\textwidth]{Snakemake/deploy_workflow}
\end{center}
\end{frame}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{frame}[fragile]
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