Change name of contents to ASTRID instead of DJS.

README.md

@@ -1,17 +1,18 @@
-# Dependent Job Submission
+# ASTRID - Automated Submission Tool foR jobs with InterDependencies
 
 This small Python 3 script solves the problem of how to submit many jobs to a job scheduler with multiple dependencies 
-between jobs. Based on an input json file, the user defines which job dependencies, and the script submits each in the 
-correct order. DJS does not wait for jobs to launch or complete before submitting dependent jobs. It is left up to the 
-job scheduler to schedule and launch the jobs, and to cancel any jobs dependent on failed jobs. 
+between jobs. This can be a particular issue when a multi-stage pipeline requires separate scheduled jobs for each stage.
+Based on an input json file, the user defines the job dependencies, and the script submits each in the correct order. 
+ASTRID does not wait for jobs to launch or complete before submitting dependent jobs - it is left up to the job scheduler 
+to schedule and launch the jobs, and to cancel any jobs dependent on failed jobs. 
 
 Job dependencies are resolved before submission, to ensure that the full pipeline can be submitted.
 
 Helpful error messages are output if the jobs cannot be submitted due to mutual dependencies.
 
 ## Usage
 
-Call DJS with python3 djs.py /name/of/input/file . The input file should be a JSON file with structure as given in 
+Call ASTRID with python3 astrid.py /name/of/input/file . The input file should be a JSON file with structure as given in 
 input.json. Jobs are listed as keys, with their dependencies as comma-separated strings in the values. Jobs with no 
 dependencies use the empty string "" as their value.
 
@@ -24,4 +25,4 @@ in your installation:
 * subprocess 
 * numpy
 * collections
-
+

djs.py → astrid.py

@@ -101,7 +101,7 @@ def print_summary(jobids):
     return
 
 
-def djs(args):
+def astrid(args):
     json_data = open(args.input_file).read()
 
     data = json.loads(json_data, object_pairs_hook=collections.OrderedDict)
@@ -134,4 +134,4 @@ def create_parser():
 if __name__ == '__main__':
     parser = create_parser()
     args = parser.parse_args()
-    djs(args)
+    astrid(args)

input.json

@@ -1,9 +1,9 @@
 {
 	"trim": "",
+	"alignment": "trim",
 	"VC1": "alignment",
-	"CNA1": "alignment",
-	"annotation": "VC1,VC2",
 	"VC2": "alignment",
-	"alignment": "trim",
+	"annotation": "VC1,VC2",
+	"CNA1": "alignment",
 	"CNA2": "alignment"
-}
+}