Graphical Modeling for Single-Cell Ca²⁺ Imaging

Code accompanying S. Rolotti, T. Rutten, P. Wei "Graphical Modeling for Single-Cell ²⁺ Imaging."

simulated_model_lib.py contains code to generate random binary graphs used for graphical modeling of neurons. These graphs are used as the structure of the neuron with simulated observation data.

model_lib.py implements Expectation-maximization for neuron graphical models on simulated data.