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18 Open 709 Closed
18 Open 709 Closed
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Issues list

Gene trend plotting with pygam with scipy>1.14.0 bug Something isn't working
#1241 opened Dec 19, 2024 by WeilerP
@michalk8
1
Why not take scipy implementation of Pearson correlation for computing lineage drivers? question Further information is requested
#1231 opened Oct 22, 2024 by VladimirShitov
@Marius1311 @WeilerP
3
Compute and plot gene module scores over pseudotime enhancement New feature or request
#1202 opened Jun 13, 2024 by sohrabsa
@michalk8
2
Question about Transition Matrix and Initial States question Further information is requested
#1198 opened May 10, 2024 by jennylsmith
@Marius1311 @WeilerP
1
Extract gene expression on pseudotime from cellrank.pl.gene_trends question Further information is requested
#1197 opened May 2, 2024 by TinyTasy
@Marius1311 @WeilerP
A question about ‘g_fwd.compute_fate_probabilities(preconditioner='ilu', tol=1e-7, solver='direct')’ question Further information is requested
#1194 opened Apr 26, 2024 by liuyang218622
@Marius1311 @WeilerP
5
ValueError: Transition matrix is not row stochastic, 8216 rows do not sum to 1. bug Something isn't working
#1192 opened Apr 25, 2024 by simonekats
@michalk8
13
gene expression trends line plots grouped by sample conditions question Further information is requested
#1191 opened Apr 22, 2024 by qinting
@Marius1311 @WeilerP
1
In cases the same cluster is estimated as initial and terminal states question Further information is requested
#1189 opened Apr 11, 2024 by st-tky
@Marius1311 @WeilerP
4
Proper use of the "Lineages" Parameter for Lineage Drivers question Further information is requested
#1182 opened Mar 28, 2024 by jwalewski
@Marius1311 @WeilerP
10
Update type hinting
#1178 opened Mar 20, 2024 by WeilerP
@WeilerP
3
Test CI fail with pytest==8.1.0
#1173 opened Mar 4, 2024 by WeilerP
1
@WeilerP @michalk8
1
BaseModel.prepare() unexpected behaviour bug Something isn't working
#1152 opened Jan 19, 2024 by nrclaudio
@michalk8
2
Segfault / python free() invalid size error during compute_transition_matrix bug Something isn't working
#1148 opened Dec 22, 2023 by KforKuma
@michalk8
5
RealTimeKernel.from_moscot(tp) Out of Memory question Further information is requested
#1146 opened Dec 12, 2023 by AlinaKurjan
@Marius1311
27
RuntimeError: No coarse-grained stationary distribution found question Further information is requested
#1135 opened Oct 24, 2023 by xyxuq
@Marius1311
6
Plot initial/terminal macrostates in one plot enhancement New feature or request
#1005 opened Mar 20, 2023 by michalk8
@michalk8
Fate probabilities towards aggregated terminal states enhancement New feature or request
#1000 opened Feb 28, 2023 by Marius1311
@WeilerP @michalk8
3
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