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23 Open 57 Closed
23 Open 57 Closed
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Issues list

idea/question (estimating gene mutation)
#100 opened Oct 7, 2024 by muntajihad
Tutorial example not working
#99 opened Sep 15, 2024 by thebeancounter
Is it possible to keep the original distribution in the output space?
#98 opened Aug 31, 2024 by HelloWorldLTY
dependencies update required
#97 opened Aug 1, 2024 by janursa
2
Restarting model training from a saved checkpoint.
#96 opened Jul 18, 2024 by ediriwas
Results are not consist with [tutorials/scgen_perturbation_prediction.ipynb]
#95 opened Jul 8, 2024 by liaowenyu
get_marginal_ll not implemented for perturbation example model
#93 opened Jun 6, 2024 by ajaynadig
TypeError: Can't instantiate abstract class SCGEN with abstract methods setup_anndata
#91 opened Nov 20, 2023 by GGboy-Zzz
2
difference between SCGEN and SCGENVAE
#89 opened Oct 8, 2023 by huawen-poppy
scgen Literal deprecation error
#88 opened Oct 5, 2023 by abuchin
1
Question about get_decoded_expression() and predict() functions
#85 opened Aug 14, 2023 by znavidi
Error in network.batch_removal() due to missing positional argument in AnnData.concatenate()
#83 opened Jul 7, 2023 by macelik
5
Update depreciated AnnData.concatenate
#82 opened Jun 21, 2023 by quentinblampey
2
Accurate requirements to setup the environment on Windows
#81 opened May 11, 2023 by pbilinskyi
How to reproduce paper results
#80 opened May 6, 2023 by SZ-qing
5
How to use data with categories unseen by a trained model
#74 opened Oct 7, 2022 by majpark21
1
Unequal size of perturbated size
#72 opened Sep 12, 2022 by XinyeZhao
Inconsistent batch removal when loading saved scGEN model
#71 opened Jun 19, 2022 by TemiLeke
Errors while reading salmonella h5ad files
#70 opened May 7, 2022 by bitcometz
1
labels_key mismatch in scgen.SCGEN.setup_anndata()
#69 opened May 6, 2022 by johnjeang
Questions about drug perturbation prediction using cell line data
#68 opened Apr 27, 2022 by GA-1101
Questions about building predictive models
#67 opened Apr 26, 2022 by GA-1101
Questions on batch removal tutorial
#58 opened Nov 16, 2021 by Pazuzzilla
2
ProTip! Exclude everything labeled bug with -label:bug.