A unified downloader+preprocessor for cancer genomics datasets
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Updated
Apr 7, 2024 - Python
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ccle
Here are 4 public repositories matching this topic...
Python script for extracting dataset from CCLE (Cancer Cell Line Encyclopedia)
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Jul 15, 2021 - Python
A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
cancer tcga breast-cancer-prediction breast-cancer stratification ccle digital-twin prognostic-biomarkers precision-oncology systems-biology-simulation breast-cancer-classification in-silico-clinical-trial patient-specific-modeling
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Oct 19, 2024 - Python
This repository contains code for MFmap (model fidelity map), a semi-supervised generative model integrating gene expression, copy number and mutation data, matching cell lines to cancer subtypes. MFmap compresses high dimensional omics data of cell lines and bulk tumours into subtype informative low dimensional latent representations and predic…
genomics cancer tcga high-dimensional-data generative-model semi-supervised-learning vae cell-lines ccle cancer-subtype drug-response cancer-stratification cellline-tumor-matching translational-medcine in-silico-perturbation
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Aug 23, 2021 - Python
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