Flood-Filling Networks for instance segmentation in 3d volumes.
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Apr 30, 2025 - Python
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connectomics
Here are 43 public repositories matching this topic...
Extraction of 3D skeletons from meshes.
python skeleton mesh neurons volumes connectomics meshes 3d skeletonization teasar skeleton-extraction skeletonize
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Aug 28, 2024 - Python
PyTorch Connectomics: segmentation toolbox for EM connectomics
computer-vision deep-learning neuroscience pytorch segmentation connectomics microscopy biomedical-image-processing
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Jun 16, 2025 - Python
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
visualization open-source awesome multisite analysis mri enigma neuroimaging connectomics workflows multiscale straight-fire life-changing-magic
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Jun 3, 2025 - Python
Read and write Neuroglancer datasets programmatically.
python cloud big-data serverless numpy matrix s3 gcs mesh tensor electron-microscopy connectomics microscopy skeletons biomedical-image-processing volumetric-data microscopy-images neuroglancer large-image chunked-image
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Jun 12, 2025 - Python
A performant, powerful query framework to search for network motifs
python neo4j graph networkx graph-database connectomics query-language connectome motif-discovery graph-matching motifs subgraph-isomorphism bossdb vf2 aplbrain dotmotif
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Jun 19, 2025 - Python
Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
algorithm network graphs network-analysis connectomics ullman subgraph-isomorphism network-biology bossdb vf2 grand-graphs aplbrain grand-iso dotmotif
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Aug 16, 2024 - Python
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
visualization python docker kubernetes cloud python3 meshing connectomics ccl multi-resolution skeletonization volumetric-data downsample neuroglancer downsampling connected-components-labeling
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Jun 20, 2025 - Python
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May 26, 2025 - Python
Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
image-processing image-analysis connectomics semantic-segmentation connectivity-matrix morphology-analysis
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Jun 26, 2025 - Python
Distributed segmentation for bio-image-analysis
segmentation connectomics bio-image-analysis watershed cluster-computing multicut 3d-segmentation microscopy-images lifted-multicut mutex-watershed
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May 13, 2025 - Python
A unified environment for DNN-based automated segmentation of neuronal EM images
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Aug 28, 2024 - Python
This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
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Jun 25, 2025 - Python
Flood filling networks for segmenting electron microscopy of neural tissue
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Dec 26, 2022 - Python
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Mar 31, 2021 - Python
FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution
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Apr 26, 2022 - Python
Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
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Jun 27, 2025 - Python
We provide a method to extract the tractographic features from structural MR images for patients with brain tumor
machine-learning connectomics tractography survival-prediction brats2018 fiber-tracts overall-survival-prediction tractographic-feature glioma
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Nov 8, 2018 - Python
Predicting multigraph brain population from a single graph
deep-learning network-analysis connectomics brain-connectivity predictive-learning geometric-deep-learning network-neuroscience medical-dataset brain-networks graph-neural-networks gnn graph-augmentation generative-learning multigraph-generation brain-mapping
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Dec 10, 2022 - Python
Code for MICCAI 2017 paper
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Sep 12, 2017 - Python
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