🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

Scripts to import your FeatureCounts output into DEXSeq

scripts for RNA-Seq analysis

Quality Control, Mapping and Reads Count for RNA-Seq Analysis

A tool for extraction of lexical features from text based on UIMA and MapReduce

This is a code tutorial for rna or dna sequence mapping by myself-RyanYip

This repository contatins a pipeline for RNA-Seq data processing using featurecounts for gene count generation

Scripts to index and align Bovine genome with HISAT2

nextflow ATACseq pipeline for GG02

Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R

Build Docker container for Subread package and (optionally) convert to Apptainer/Singularity.

A pipeline to call intron and intergenic eRNAs from PRO-seq Data