A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.
shell
bash
cli
r
ubuntu
nextflow
hpc
deseq2
google-cloud-platform
samtools
featurecounts
bowtie
ngs-analysis
cutadapt
ngs-pipeline
fastqc
sratoolkit
apptainer
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Updated
Nov 7, 2024 - Nextflow