Suite of tools for use in genome assembly and consensus. Work in progress.
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Updated
Mar 22, 2021 - Go
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genome-mapping
Here are 6 public repositories matching this topic...
Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
bioinformatics
pipeline
genomics
bioinformatics-pipeline
fasta
smalt
structurevariation
genomes-comparison
genome-mapping
genome-alignment
pav-sequences
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Mar 5, 2018 - C
A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions
python
genome
proteins
protein
data-analysis
fasta
orfs
genome-analysis
orf
genome-mapping
sars
covid-19
covid
covid19
sars-cov-2
covid19-data
protein-encoding
proteinblast
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Mar 25, 2022 - Jupyter Notebook
Implement and compare 2 pattern matching algorithms for genome mapping, one using suffix array and the other using Burrows-Wheeler Transform
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Dec 22, 2020 - Python
Docker to run BWA for aligning sequences against a reference genome
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Mar 6, 2018
Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees
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Updated
Jun 30, 2023
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