H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
SMETANA: a tool to analyse interactions in microbial communities
mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models
Designing microbial communities
Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3
Collection of scripts to collect data from databases such as BRENDA, BiGG, and the chemical translation service, and update a model of CHO-K1 growth.
Trim, extract, and convert GEMs
CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool
iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
A metabolic modeling workflow for communities of organisms in an nasal medium.
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