Gene Set Enrichment Analysis and Over Representation Analysis analysis using R

Biopython Jupyter Notebook tutorial to characterize a small genome

online notebooks for a review of genome sketching

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Notebooks and examples for DeepVariant on Spark project.

Genome-wide association studies identify genetic variations associated with a target disease or trait. Researchers and clinicians can use this information to better detect, treat and prevent chronic health conditions. This Solution Accelerator notebook builds on top of Glow

SARS-CoV-2 genomics surveillance work notebooks for data management and analysis.

A Jupyter Docker Stack for Plant Scientists and Breeders

Example notebooks utilizing the GenePattern Notebook environment.

Genome-to-Genome Study of Hepatitis B Virus-infected individuals; EPFL, Fellay lab

Data science project work with genomics/biological data

Here, I share notebooks, scripts and mardown files describing bioinformatics tools to analyse biological data.

This repo offers a workflow dedicated to utilizing BERTopic for Semantic Graph-based information retrieval in nutrigenomics. It includes Jupyter notebooks on topic modeling and semantic graph creation, aimed at enhance genetic literature exploration. Ideal for genomic researchers, it simplifies the analysis of nutrition-related genetic information.